(6) CpG Transformer for imputation of single-cell methylomesG. De Waele, J. Clauwaert, G. Menschaert and W. Waegeman(2022) BIOINFORMATICS. 38, 597-603. |
(5) Novel transformer networks for improved sequence labeling in genomicsJ. Clauwaert and W. Waegeman(2022) IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS. 19, 97-106. |
(4) Improving the performance of machine learning models for biotechnology: the quest for deux ex machinaF. Mey, J. Clauwaert, K. Van Huffel, W. Waegeman and M. De Mey(2021) BIOTECHNOLOGY ADVANCES. 53, 107858. |
(3) Explainability in transformer models for functional genomicsJ. Clauwaert, G. Menschaert and W. Waegeman(2021) BRIEFINGS IN BIOINFORMATICS. 22, 1-11. |
(2) Predictive design of sigma factor-specific promotersM. Van Brempt, J. Clauwaert, F. Mey, M. Stock, J. Maertens, W. Waegeman and M. De Mey(2020) NATURE COMMUNICATIONS. 11, 5822. |
(1) DeepRibo: a neural network for the precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patternsJ. Clauwaert, G. Menschaert and W. Waegeman(2019) NUCLEIC ACIDS RESEARCH. 47, e36. |